Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks
Combination image showing this year's winners of the Nobel Prize in chemistry: University of Washington computational biologist professor David Baker (left) at his lab in Seattle, Washington, and Demis Hassabis and John M. Jumper at the offices of Google DeepMind UK in London, Britain, on October 9, 2024. (REUTERS/AFP photos)
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Updated 10 October 2024
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Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks

Nobel Prize in chemistry honors 3 scientists who used AI to design proteins — life’s building blocks
  • David Baker created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature
  • Demis Hassabis and John Jumper created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified

LONDON: Three scientists who discovered powerful techniques to decode and even design novel proteins — the building blocks of life — were awarded the Nobel Prize in chemistry Wednesday. Their work used advanced technologies, including artificial intelligence, and holds the potential to transform how new drugs and other materials are made.
The prize was awarded to David Baker, a biochemist at the University of Washington in Seattle, and to Demis Hassabis and John Jumper, computer scientists at Google DeepMind, a British-American artificial intelligence research laboratory based in London.
Heiner Linke, chair of the Nobel Committee for Chemistry, said the award honored research that unraveled “a grand challenge in chemistry, and in particular in biochemistry, for decades.”
“It’s that breakthrough that gets awarded today,” he said.
What is the 2024 Nobel Prize in Chemistry for?
Proteins are complex molecules with thousands of atoms that twist, turn, loop and spiral in a countless array of shapes that determine their biological function. For decades, scientists have dreamed of being able to efficiently design and build new proteins.
Baker, 62, whose work has received funding from the National Institutes of Health since the 1990s, created a computer program called Rosetta that helped analyze information about existing proteins in comprehensive databases to build new proteins that don’t exist in nature.
“It seems that you can almost construct any type of protein now with this technology,” said Johan Åqvist of the Nobel committee.
Hassabis, 48, and Jumper, 39, created an artificial intelligence model that has predicted the structure of virtually all the 200 million proteins that researchers have ever identified.
The duo “managed to crack the code. With skillful use of artificial intelligence, they made it possible to predict the complex structure of essentially any known protein in nature,” Linke said.

Why does this work matter?
The ability to custom design new proteins — and better understand existing proteins — could enable researchers to create new kinds of medicines and vaccines.
It could also allow scientists to design new enzymes to break down plastics or other waste materials that would neutralize pollution, Baker told a news conference, or even come up with entirely new material for semi conductors.
“I think there’s fantastic prospects for making better medicines — medicines that are smarter, that only work in the right time and place in the body,” Baker told The Associated Press.
One example is a potential nasal spray that could slow or stop the rapid spread of specific viruses, such as COVID-19, he said. Another is a medicine to disrupt the cascade of symptoms known as cytokine storm.
“That was always the holy grail. If you could figure out how protein sequences folded into their particular structures, then it might be possible to design protein sequences to fold into previously never seen structures that might be useful for us,” said Jon Lorsch, a director at the NIH.
How did the winners react?
Baker told the AP he found out he won the Nobel during the early hours of the morning alongside his wife, who immediately started screaming.
“So it was a little deafening, too,” he said.




Computational biologist professor David Baker speaks to coworkers at the University of Washington in Seattle after receiving the 2024 Nobel Prize in chemistry on October 09, 2024. (Getty Images/AFP)

Hassabis said he was just having a “normal morning” at home when he eventually got the call.
The Nobel committee didn’t initially have his number and first managed to get hold of his wife, but she hung up on them a few times, he told an online news briefing.
“They kept persisting and then I think she realized it was a Swedish number and then they asked for my number,” he said.
“It’s so incredible. It’s so unreal at this moment,” said Jumper, a researcher and director at Google DeepMind. “And it’s wonderful.”
What was the role of AI?
One of Britain’s leading tech figures, Hassabis co-founded the AI research lab DeepMind in 2010, which was acquired by Google in 2014. Among its past breakthroughs was developing an AI system that mastered the Chinese game Go and defeated the game’s human world champion.
In the past researchers labored for months or years to decode the structure of a single complex protein.
But the AI model created by the DeepMind researchers, called AlphaFold, “can determine the structure of a protein pretty accurately within a few seconds or minutes,” Hassabis told the AP in an interview, adding that this saves researchers “years of potentially painstaking experimental work.”
The two research groups learned from each other’s work.




Johan Aqvist, member of the Nobel Committee for Chemistry, Hans Ellegren, permanent secretary and Heiner Linke, committee chairman award this year's Nobel Prize in Chemistry to David Baker, Demis Hassabis, and John Jumper at the Royal Swedish Academy of Sciences, in Stockholm, Sweden, on Oct. 9, 2024. (TT News Agency via AP)

Baker said Hassabis and Jumper’s artificial intelligence work gave his team a huge boost.
“The breakthroughs made by Demis and John on protein structure prediction really highlighted to us the power that AI could have,” said Baker. “And that led us to apply these AI methods to protein design.”
Science has sped up, said Jumper. “It is a key demonstration that AI will make science faster “
It’s the second Nobel prize this year awarded to someone with links to artificial intelligence research at Google.
Nobel physics prize winner Geoffrey Hinton, 76, often called the “godfather of AI,” also worked at the California-based tech company until quitting so he could speak more openly about the potential downsides of AI.
“I’m hoping AI will lead to tremendous benefits,” Hinton told a news conference Tuesday. “I’m convinced that it will do that in health care.”
“My worry is that it may also lead to bad things. And in particular, when we get things more intelligent than ourselves, no one really knows whether we’re going to be able to control them.”
More about the Nobels
Wednesday’s chemistry prize winners represent a younger generation taking forward the work of the AI pioneers honored for physics, said Michael Kearns, a computer scientist at the University of Pennsylvania.
They are making AI models “scalable and practical and applying it to very important scientific problems.”
Baker gets half of the 11 million Swedish Kronor ($1 million) prize money, while Hassabis and Jumper share the other half.
The Nobel announcements opened Monday with medical researchers Victor Ambros and Gary Ruvkun winning the medicine prize. Hinton and fellow AI pioneer John Hopfield, 91, won the physics prize.
The awards continue with the literature prize Thursday, the Nobel Peace Prize Friday and the economics award on Oct. 14.
The prize money comes from a bequest by the award’s creator, Swedish inventor Alfred Nobel. The laureates are invited to receive their awards at ceremonies on Dec. 10, the anniversary of Nobel’s death.


Indian forces clash with Maoist rebels, five dead

Indian forces clash with Maoist rebels, five dead
Updated 15 sec ago
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Indian forces clash with Maoist rebels, five dead

Indian forces clash with Maoist rebels, five dead
  • More than 10,000 people have died in the decades-long insurgency waged by Naxalite rebels
  • Government forces stepped up efforts last year to crush the long-running armed conflict
NEW DELHI: Indian security forces on Sunday battled with Maoist rebels in their forested heartland, police said, with at least four guerillas and one policeman killed.
More than 10,000 people have died in the decades-long insurgency waged by Naxalite rebels, who say they are fighting for the rights of marginalized indigenous people in India’s resource-rich central regions.
Government forces stepped up efforts last year to crush the long-running armed conflict, with some 287 rebels killed in 2024, according to government figures.
Clashes broke out late Saturday in Abujhmarh district of Chhattisgarh state, a key battleground in the insurgency.
“Four bodies of Maoists, who were in their battle uniform, have been recovered after an encounter with police forces,” police inspector general P. Sunderraj said, adding one police constable had also been killed.
“Action is still on,” he said.
Around 1,000 suspected Naxalites were arrested and 837 surrendered during 2024.
Amit Shah, India’s interior minister, warned the Maoist rebels in September to surrender or face an “all-out” assault, saying the government expected to quash the insurgency by early 2026.
The insurgency has been drastically restricted in area in recent years.
The Naxalites, named after the district where their armed campaign began in 1967, were inspired by the Chinese revolutionary leader Mao Zedong.
They demanded land, jobs and a share of the region’s immense natural resources for local residents, and made inroads in a number of remote communities across India’s east and south.
The movement gained in strength and numbers until the early 2000s when New Delhi deployed tens of thousands of security personnel against the rebels in a stretch of territory known as the “Red Corridor.”
Authorities have since invested millions of dollars in local infrastructure and social projects to combat the Naxalite appeal.

South Korean protesters brave cold to demand Yoon Suk Yeol’s ouster as detention deadline looms

South Korean protesters brave cold to demand Yoon Suk Yeol’s ouster as detention deadline looms
Updated 05 January 2025
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South Korean protesters brave cold to demand Yoon Suk Yeol’s ouster as detention deadline looms

South Korean protesters brave cold to demand Yoon Suk Yeol’s ouster as detention deadline looms
  • Dozens of anti-corruption agency investigators and police attempted to execute a detainment warrant against Yoon on Friday
  • But there was tense standoff with the presidential security service that lasted more than five hours

SEOUL: Hundreds of South Koreans, bundled up against freezing temperatures and snow, rallied overnight into Sunday near the residence of impeached President Yoon Suk Yeol, calling for his ouster and arrest, as authorities prepared to renew their efforts to detain him over his short-lived martial law decree.
Dozens of anti-corruption agency investigators and police attempted to execute a detainment warrant against Yoon on Friday but retreated from his residence in Seoul after a tense standoff with the presidential security service that lasted more than five hours.
The one-week warrant for his detention is valid through Monday. There were no immediate indications that anti-corruption authorities were ready to send investigators back to the residence as of Sunday afternoon. Staff from the presidential security service were seen installing barbed wire near the gate and along the hills leading up to Yoon’s residence over the weekend, possibly in preparation for another detention attempt.
A Seoul court last Tuesday issued a warrant to detain Yoon and a separate warrant to search his residence after the embattled president repeatedly defied authorities by refusing to appear for questioning and obstructing searches of his office. But enforcing them is complicated as long as Yoon remains in his official residence.
Investigators from the country’s anti-corruption agency are weighing charges of rebellion after the conservative president, apparently frustrated that his policies were blocked by a legislature dominated by the liberal opposition, declared martial law on Dec. 3 and dispatched troops to surround the National Assembly.
The Assembly overturned the declaration within hours in a unanimous vote and impeached Yoon on Dec. 14, accusing him of rebellion, while South Korean anti-corruption authorities and public prosecutors opened separate investigations into the events.
If the anti-corruption agency manages to detain Yoon, it will likely ask a court for permission to make a formal arrest. Otherwise, Yoon will be released after 48 hours.
The Corruption Investigation for High-Ranking Officials, which is leading a joint investigation with police and military investigators, says detaining Yoon would be “virtually impossible” as long as he is protected by the presidential security service. The agency has urged the country’s acting leader, Deputy Prime Minister Choi Sang-mok, to instruct the service to comply with their execution of the detainment warrant, but Choi has yet to publicly comment on the issue.
The chiefs and deputy chiefs of the presidential security service defied summonses on Saturday from police, who planned to question them over the suspected obstruction of official duty following Friday’s events.
Hundreds of anti-Yoon protesters rallied for hours near the gates of the presidential residence from Saturday evening to Sunday, voicing frustration over the failed detention attempt and demanding stronger efforts to bring Yoon into custody. Separated by police barricades and buses, pro-Yoon protesters were gathering in nearby streets, denouncing his impeachment and vowing to block any efforts to detain him.
Yoon’s lawyers have challenged the detention and search warrants against the president, saying they cannot be enforced at his residence due to a law that protects locations potentially linked to military secrets from search without the consent of the person in charge — which would be Yoon. They also argue the anti-corruption office lacks the legal authority to investigate rebellion charges and that police officers don’t have the legal authority to assist in detaining Yoon.
While the presidential security act mandates protection for Yoon, it does not authorize the presidential security service to block court-ordered detainments. The service’s attempts to block the execution of the warrant may amount to an obstruction of official duty, according to Park Sung-bae, an attorney specializing in criminal law. While the president mostly has immunity from prosecution while in office, the protection does not extend to allegations of rebellion or treason.
The agency said its outnumbered investigators had several scuffles with presidential security forces that threatened their safety and expressed “serious regret” that Yoon was not complying with the legal process.
After getting around a military unit guarding the residence’s grounds, the agency’s investigators and police were able to approach within 200 meters (yards) of Yoon’s residential building but were stopped by a barricade comprising around 10 vehicles and approximately 200 members of the presidential security forces and troops. The agency said it wasn’t able to visually confirm whether Yoon was inside the residence.
The Defense Ministry says the troops at Yoon’s official residence are under the control of the presidential security service. Kim Seon-ho, the acting defense minister, conveyed his concern to the presidential security service, saying that deploying military personnel to block the execution of the detention warrant would be “inappropriate” and requesting that the troops aren’t placed in a position where they might confront police, according to the ministry.
Yoon’s defense minister, police chief and several top military commanders have already been arrested over their roles in the period of martial law.
Yoon’s presidential powers have been suspended since the National Assembly voted to impeach him on Dec. 14. Yoon’s fate now lies with the Constitutional Court, which has begun deliberations on whether to uphold the impeachment and formally remove Yoon from office or reinstate him.


More records found linking Credit Suisse, Nazi accounts: US panel

More records found linking Credit Suisse, Nazi accounts: US panel
Updated 05 January 2025
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More records found linking Credit Suisse, Nazi accounts: US panel

More records found linking Credit Suisse, Nazi accounts: US panel
  • US Senate Budget Committee says Credit Suisse concealed information during previous inquiries into Nazi-controlled bank accounts during World War II
  • Credit Suisse, now a subsidiary of investment bank UBS, agreed in 1998 to take part in a $1.25 billion settlement of lawsuits brought by Holocaust survivors

WASHINGTON: An investigation by a US Senate panel has found that troubled investment bank Credit Suisse concealed information during previous inquiries into Nazi-controlled bank accounts during World War II.
Tens of thousands of documents discovered during an ongoing examination have provided new proof of the existence of account holders linked to the Nazis, the Senate Budget Committee said in a statement released Saturday.
The bank did not reveal the existence of these accounts during previous investigations, notably in the 1990s, the committee said.
Credit Suisse, now a subsidiary of investment bank UBS, agreed in 1998 to take part in a $1.25 billion settlement of lawsuits brought by Holocaust survivors, but it has been accused of not being completely open about its past dealings with Nazis.
The Senate committee said Saturday that one set of newly discovered files, including 3,600 physical documents and 40,000 microfilms, was found to have a “high relevance rate” of Nazi connections.

Screenshot image showing a portion of a US Senate Budget Committee investigation into Credit Suisse’s World War II-era accounts, which was posted online by Sen. Chuck Grassley.

It said the revelations stem from an interim report by former prosecutor Neil Barofsky, who was fired as an “independent ombudsperson” by the bank in 2022 after being pressed to limit his investigative work.
Barofsky was reinstated in the role in 2023 “as a result of the Committee’s investigation,” and after UBS’s takeover of Credit Suisse.
In a letter to the panel released Saturday, Barofsky noted the “extraordinary level of cooperation that Credit Suisse, under the leadership of UBS, has provided” since he rejoined the company.
But he said Credit Suisse had yet to share all the information it held.
The Barofsky team has discovered, among other things, accounts controlled by high-ranking SS officers, the Wall Street Journal reported.
In his letter, Barofsky highlighted “especially noteworthy” discoveries from a Credit Suisse research department.
“Numerous client files in the sample are marked with a stamp stating ‘Amerikanische schwarze Liste’ — meaning ‘American Black List’ — a list maintained by the Allies of individuals and companies that were directly financed by, or were known to regularly trade with, Axis powers,” he wrote.
“One file bearing this stamp relates to an entity that was involved in selling looted Jewish assets.”
Contacted by AFP, UBS said it was committed to providing a complete record of the former Nazi-linked accounts in Credit Suisse’s predecessor banks.
It said it would provide Barofsky with all necessary assistance in his work to shed light “on this tragic period.”
The Senate panel’s investigation is continuing.
 


End of Ukraine gas transit deal plunges Moldova’s pro-Russian region into crisis

End of Ukraine gas transit deal plunges Moldova’s pro-Russian region into crisis
Updated 05 January 2025
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End of Ukraine gas transit deal plunges Moldova’s pro-Russian region into crisis

End of Ukraine gas transit deal plunges Moldova’s pro-Russian region into crisis
  • Kyiv refuses to renew the deal, leaving the breakaway region of Transdniestria without gas
  • With longer rolling blackouts, residents are left without heating, hot water

KYIV: The pro-Russian breakaway Moldovan region of Transdniestria, left without Russian gas supplies no longer transiting through neighboring Ukraine, faced longer periods of rolling power cuts on Saturday, local authorities said.
Flows of Russian gas via Ukraine to central and eastern Europe stopped on New Year’s Day after a transit deal expired between the warring countries and Kyiv refused to extend it.
Transdniestria, a mainly Russian-speaking enclave which has lived side-by-side with Moldova since breaking away from it in the last days of Soviet rule, received gas from Russian giant Gazprom through the pipeline crossing Ukraine.
The gas was used to operate a thermal plant which provided electricity locally and for much of Moldova under the control of the pro-European central government.
The region’s self-styled president, Vadim Krasnoselsky, writing on the Telegram messaging app, said rolling power cuts in various districts would be extended to four hours on Sunday.
Hour-long cuts were first imposed on Friday evening after heating and hot water supplies were curtailed. The cuts were then extended to three hours on Saturday.
“Yesterday’s introduction of rolling cuts was a test. And it confirmed that an hour-long break to keep the electrical supply system operating was insufficient,” Krasnoselsky wrote. “The power generated is not covering sharply rising demand.”
All industries except those producing food have been shut down. The official Telegram news channel of the region’s separatist authorities announced the official closure on Saturday of a steel mill and bakery in the town of Rybnitsa.
Regional officials announced new measures to help residents, especially the elderly, and warned that overnight temperatures would fall to -10 Celsius (+14 Fahrenheit). Residents were told not to put strain on the region’s mobile phone network.

Using firewood
The news channel warned against using heaters in disrepair after two residents died of carbon monoxide poisoning from a stove. Online pictures showed servicemen loading up trucks with firewood for distribution.
“Don’t put off gathering in firewood,” Krasnoselsky told residents. “It is better to ensure your supply in advance, especially since the weather is favorable so far.”
Moldova’s government blames Russia for the crisis and has called on Gazprom to ship gas through the Turkstream pipeline and then through Bulgaria and Romania.
Russia denies using gas as a weapon to coerce Moldova, and blames Kyiv for refusing to renew the gas transit deal.
The Transdniestria power cuts are a problem for Moldova particularly because the enclave is home to a power plant which provides most of the power for government-controlled areas of Moldova at a fixed and low price.
Prime Minister Dorin Recean said on Friday his country faced a security crisis after Transdniestria imposed the rolling blackouts, but he also said the Chisinau government had prepared alternative arrangements, with a mixture of domestic production and electricity imports from Romania.
Even before the halt of supplies via Ukraine, Gazprom had said it would suspend exports to Moldova on Jan. 1 because of what Russia says are unpaid Moldovan debts of $709 million. Moldova disputes that and put the figure at $8.6 million.


Mali’s army claims arrest of Daesh group leader

Mali’s army claims arrest of Daesh group leader
Updated 05 January 2025
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Mali’s army claims arrest of Daesh group leader

Mali’s army claims arrest of Daesh group leader

BAMAKO: Mali’s army said Saturday its forces had arrested two men, one of them a leading figure in the Sahel branch of the Daesh group.
The army announced they had also killed several of the group’s fighters during an operation in the north of the country.
A statement from the army said they had arrested “Mahamad Ould Erkehile alias Abu Rakia,” as well as “Abu Hash,” who they said was a leading figure in the group.
They blamed him for coordinating atrocities against people in the Menaka and Gao regions in the northeast of the country, as well as attacks against the army.
Mali has faced profound unrest since 2012 linked both to militants associated with Al-Qaeda and the Daesh group, and to local criminal gangs.
The country’s military rulers have broken ties with former colonial power France and turned, militarily and politically, to Russia.